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Web applications are better. With a web application you can separate what you see and what will be done in a better way. You can also distribute your content, services, functions or what other you want with a snap.
Web applications are more portable than the traditionally desktop ones that rely too much on the underlying o.s. platform (and/or other specific sub components).
If you code your ideas as a web application you can distribute it to a few number of clients as to hundreds of thousands. They can see your system with browser, boxed clients, mobile devices and more.
Moreover, if your web application is an open source one and it is based on interpreted language as PHP, it will be very simple to mantain and to expand.
Unique problem is a sort of inertial conviction that a web application cannot be good, simple and usable as a standard desktop one. Joomatic is here to change that point of view. Joomatic want to break the distinction from web and desktop to speak instead only of the application.
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